Samuel Hawarden

Non-standard home folder location: FATAL container creation failed: failed to add as session directory: path . is not an absolute path

8

### Issue Containers run normally for users whose home is /home/USERNAME but not things like /home/DOMAIN/USERNAME Both directory locations are NFS mounts and are working. ### Version of Singularity: ```...

No way to trigger on key release (on_release, is_pressed, is_down)

20

### Has this issue already been reported? - [X] I have searched through the existing issues. ### Is this a question rather than an issue? - [X] This is not...

64 bit index breaks alt aware alignment.

2

If you have a 64 bit system, binary and index file set but no matching reference.fasta.64.alt file (say only a reference.fasta.alt that comes from run-gen-ref) then bwa will not run...

### Is there an existing issue for this? - [X] I have searched the existing issues ### OS Linux ### GPU amd ### VRAM 8GB ### What version did you...

Bug: Doesn't detect AMD GPUs

5

### Describe the bug The status plugin for GPU usage doesn't process AMD and intel GPUs ### To Reproduce Steps to reproduce the behavior: 1. Have something other than an...

Running `pip install deepcpg` does not include any version `tensorflow`, let alone the correct one. `pip install tensorflow` results in `ModuleNotFoundError: No module named 'keras.layers.merge'` on `cpg.py`'s `... import concatenate`

The shebang that comes with `pip install deepcpg` is `#!/anaconda3/envs/deepcpg/bin/python` instead of something more sane like `#!/bin/env python3`

### Platform: OS: Garuda Linux x86_64 Kernel: 6.8.1-AMD-znver3 DE: KDE Plasma 6.0.2 WM: KWin (Wayland) ### Gamescope command line: ``` /usr/bin/gamescope \ --nested-unfocused-refresh 9 \ --nested-refresh 144 \ --output-width 3440...

Feature: Macro set to random number in range

3

Would it be possible to have a `rand(variable: str, minvalue: int, maxvalue: int)` macro operation to set a variable to some integer between `min` and `max`? Something like `.../injection/macros/macros.py`: ```...

[Compile] ‘gettimeofday’ was not declared in this scope

1

While compiling on ubuntu 22.04.2 using GCC 12.2.0 I get a bunch of the following errors: ``` utility/src/system/time-v1.H:88:5: error: ‘gettimeofday’ was not declared in this scope; did you mean ‘SYS_gettimeofday’?...