shanpriya3
shanpriya3
Hi, I have a ground-truth with 3 classes including background with values 0,127,255. As mentioned in #43 I changed num_classes=3 in axialnet.py In utils.py, https://github.com/jeya-maria-jose/Medical-Transformer/blob/703a080d66d16673be1b8770bca143956c9f0e8a/utils.py#L156-L157 which makes the ground-truth with...
Hello, I am trying to preprocess the LIDC dataset but I am getting the following errors. No DICOM's found for file: /LIDC-IDRI-Preprocessing/LIDC_Dataset/XML_Data/LIDC-XML-only/tcia-lidc-xml/186/075.xml /LIDC-IDRI-Preprocessing/LIDC_Dataset/XML_Data/LIDC-XML-only/tcia-lidc-xml/186/049.xml /LIDC-IDRI-Preprocessing/LIDC_Dataset/XML_Data/LIDC-XML-only/tcia-lidc-xml/186/049.xml 1.3.6.1.4.1.14519.5.2.1.6279.6001.212697393127299815450339637649 1.3.6.1.4.1.14519.5.2.1.6279.6001.410251741986998833890312367579 [] No DICOM's found...
I am training UNETR model in a custom dataset with labels =0,1,2. When I train my model using python main.py \ --in_channels=1 \ --out_channels=3 \ --space_x=1.0 \ --space_y=1.0 \ --space_z=1.0...