Shan E Ahmed Raza

Please rename the notebook to `10-wsi-registration.ipynb` to make it consistent with current format. We will update it later when we restructure the examples.

Please also upload with results as in other example notebooks.

Please can you also update https://github.com/TissueImageAnalytics/tiatoolbox/blob/develop/examples/README.md

yes --- View entire conversation on ReviewNB

pip install git+https://github.com/TissueImageAnalytics/tiatoolbox.git@dev-non-rigid-registeration --- View entire conversation on ReviewNB

@ruqayya I am merging this PR to create a link on master and to make a release. I will reopen this PR so you can address comments from David.

@ruqayya Please can you create a new PR using the same branch? Please address David's comments in that PR https://github.com/TissueImageAnalytics/tiatoolbox/files/9830884/comments.docx

> I am also having some issues when reading at different pyramid levels: I think (but I am not sure) that these lines: > > https://github.com/TissueImageAnalytics/tiatoolbox/blob/b3ace851ac61cbeee1f382b33925d8a9b0a1be55/tiatoolbox/wsicore/wsireader.py#L3505-L3521 > > should look...

Keeping this issue open to address this comment https://github.com/TissueImageAnalytics/tiatoolbox/issues/452#issuecomment-1278991551

I think we should keep an eye on https://github.com/openslide/openslide/pull/344. As this may help resolve some of the problems.