sgarudadri

Thanks for your responses. Here is the version info: Name Version Build Channel crispresso2 2.3.2 py312hfd810cf_0 bioconda From the beginning I was suspicious about the region file. I have actually...

Hi Cole, Here is the version info: pandas 2.2.3 py312h98e817e_1 conda-forge Thanks for your help, Suresh

Thanks! After removing the headers CRISPRessoWGS indeed ran without errors. A new problem however is that only 119 reads were extracted from the BAM file. I tried to look through...

Yes this must have been the issue, I ended up selecting a different region and the alignment rate was as expected. Does CRISPRessoWGS output an Allele Frequency Table plot? Related...

Thanks, yes to clarify I was able to navigate to the CRISPResso output for the region, but for some reason the Allele Frequency Plot is missing. The table is present...