sg-wbi
sg-wbi
### INTRO This introduces a metadata attribute `_TAGS`. The values in `_TAGS` are, well tags, to further classify the task. These tags are meant to be used together w/ `_SUPPORTED_TASKS`....
medal, msh_wsd, nlm_wsd have NED and no NER, but NED entails NER.
Adds `_PUBMED` metadata to new datasets
From paper: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5029005/ Figure 2. They seem to have an identifier for plants.
From the `README`: ``` 1) Protein-organism-residue triplet relations a) XML Tag : eg: O:SaccharomycesP:Vps4p (End13p), AAA-family ATPase;R:Vps4p-(K179A);A:ATP binding Entity Identifiers = O: Organism, P: Protein, R: Residue, A: Catalytic triad...
From the paper ``` Concept Unique Identifiers (CUI) corre- sponding to French terms from the UMLS (Lindberg et al., 1993) for single or multi- word terms. For multi-word terms, the...
From https://github.com/jayded/evidence-inference/blob/master/annotations/README.md: ``` Start Evidence: This column represents what index in the text that the “reasoning” from this row starts at (this is inclusive). End Evidence: This column represents what...
``` File: euadr_corpus/16950808.txt Drug-Disorder True concept Tolerance 0 9 annotator1,annotator4,Computer,annotator5 ['umls/C0002218'] 0 Diseases & Disorders ``` This ` ['umls/C0002218']` seems to be a UMLS code. https://github.com/bigscience-workshop/biomedical/tree/master/bigbio/biodatasets/euadr
From the title: "DisTEMIST corpus: detection and **normalization** of disease mentions in spanish clinical cases" And the website, https://temu.bsc.es/distemist/: ``` DISTEMIST-linking subtrack: requires automatically finding disease mentions in published clinical...
This dataset has a "Metadata" folder with document keywords, allowing for document indexing, i.e. mulit-label "TEXT_CLASSIFICATION", but "_SUPPORTED_TASKS" has only NER and TRANSLATION. https://github.com/bigscience-workshop/biomedical/blob/master/bigbio/biodatasets/diann_iber_eval/diann_iber_eval.py