Jess Byun

Installation probelm r/4.3.1

6

I have tried in r/4.3.1 ``` install.packages("remotes") remotes::install_github("stan-dev/rstantools") remotes::install_github("davidaknowles/leafcutter/leafcutter", ref = "psi_2019") ``` Now, I cannot install the : `remotes::install_github("davidaknowles/leafcutter/leafcutter")` I was getting error below: ``` 654 | return internal::first_aligned(m);...

ENSG id and gene name not matching

3

Dear Leafcutter team, I have realized that in the differential leafcutter, data xxx.RData output file, the same gene name appears to be correct along with the coordinates, but the ENSGID...

question regarding p-value for each intron usage

1

Dear Leafcutter team, I am curious that I am trying to get the p-value for each intron usage, not the clu level. My only thought was getting t-test between comparison...

I am attempting to determine if there exists an output matrix that could include AS (alternative splicing) types similar to the supplementary figure 1 in the paper (https://www.nature.com/articles/s41588-017-0004-9). If the...