Sebastian Niehus

Fix behavior of jumpToRegion with linear indices containing 0.

3

Adressing issue #2319. __getMinFileOffset() would return 0 on older BAI versions, causing crashes when trying to call readRecord after jumping to the given offset.

Bug in __getMinFileOffset()

17

Related to #2273. (using commit 19f556177d47f9c78c34b5bdc1dc49131791b181). When using jumpToRegion() with BAI files created by Picard tools or samtools-0.1.7, __getMinFileOffset() return 0 for the file offset, because those indices will contain...

Missing fastq-files of runs in kids cohort in ENA and SRA

1

Hi, I tried to download the fastq-files for the 50 samples in the kids cohort. Unfortunately the fastq files for the following samples are missing from ENA: - ERR2304560 -...

Empty files produced by kevlar split cause crash of kevlar assemble

3

I am trying to run the [tutorial workflow](https://kevlar.readthedocs.io/en/latest/tutorial.html) with kevlar v0.7+15.gebabd62. The Snakemake workflow stops when coming to the rule "assemble", throwing the following error message: ``` Traceback (most recent...