raptor

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Phibf

2

smehringer

Partially revert #379

eseiler

HIBF creates a very large index

3

Hi I have been trying to build an index of a large collection of microbial genomes (102999) using HIBF and the resulting index is way larger than when I create...

genomewalker

String identifier for user bins

1

I suggest to have an option to tag user bins with a name/identifier. That would facilitate integration with other tools and downstream analysis. Currently, AFAIK, it accepts in the `raptor...

pirovc

* [ ] Add `find_package` for SeqAn3 * [x] Add `find_package` for googletest/googlebenchmark, use fetch_content if not found * [ ] Add a {ctest,cmake} flag that results in printing `result.command`...

eseiler

example syntax for restrictions

1

Mostly for @SGSSGene

mr-c

- [ ] Finalise usage - [ ] Update methods

eseiler

* Remove `user_bin_filenames` from `include/raptor/hierarchical_interleaved_bloom_filter.hpp` * Remove `compressed_` from `include/raptor/index.hpp`

eseiler

eseiler

Some changes that I've made over the time.

2

Let's check what we need from it

smehringer