Sarah Martin

Thank you for the quick response! The command you gave me additionally says "done" `lab@csm-minionpc:~/SquiggleKit$ python SquigglePlot.py -p /home/lab/SquiggleKit/lytic.fast5 -m --save lytic.pdf --save_path ~/img Done` after the common but nothing...

I managed to just generate signals using Squiggle Pull because I ultimately wanted to use Motif Seq. I managed to get Motif Seq running (mostly, I guess, that's why I'm...

Sorry, the command I used was actually `python3 MotifSeq.py -s lytic.tsv -i 19_kmer.fa > lytic_19.tsv` my bad for the typo

I've seemingly gotten everything to start working! One last question, do you think MotifSeq would ever be able to incorporate looking at RNA?

When I try to generate the RNA model and incorporate that into the MotifSeq.py it tells me IndexError: list index out of range. Without modeling and just using the .fa...