Fayaz Seifuddin

MSISensor normalization issue. Please help!

1

Hi, We are running MSISensor version 0.60 for some clinical trials using whole exome sequencing (WES) data. We are using deduplicated BAM files as input. All other parameters set to...

Using demultiplexed BAM files output from zUMIs with Picard Tools

1

Hi, I am trying to use the demultiplexed BAM output from zUMIs with Picard Tools but, it does not seem to be working. Below are a few lines from a...

CelFiE with normal lung tissue samples

5

Hi Christa, Thank you for developing CelFiE. I am trying to run CelFiE on 2 samples (adult normal lung tissues-WGBS). After getting the coverage file from Bismark, I ran your...