Sebastien Boisvert

icon indicating a website link http://x.com/sebhtml icon indicating an email [email protected]

icon company Contxtful Technologies icon location Quebec City icon location I like software development, AI, biology and using good tools like git, cargo, and docker.

Results 83 comments of Sebastien Boisvert

Ray on x86 seg fault: Address not mapped (Vertex::addRead)

Thank you Matt. https://www.mail-archive.com/[email protected]/msg00735.html I will fix #218 and #222 then this one.

Ray on x86 seg fault: Address not mapped (Vertex::addRead)

maybe this is related to checkpointing like in #222

Filter automatically obvious false positives in "Ray Communities" using topology

dependency: #146

Filter automatically obvious false positives in "Ray Communities" using topology

A good hit: Odoribacter_splanchnicus_DSM_20712_uid63397 0gi|325278757|ref|NC_015160.1| Odoribacter splanchnicus DSM 20712 314392258 28994320.6601238 A bad hit: Desulfovibrio_aespoeensis_Aspo_2_uid42613 0gi|317151727|ref|NC_014844.1| Desulfovibrio aespoeensis Aspo-2 c 313629079 41600.00114632 For profiles, the raw proportion could be used...

seed registration fails at -k 51 but not -k 49

http://article.gmane.org/gmane.science.biology.ray-genome-assembler/689

seed registration fails at -k 51 but not -k 49

see https://www.mail-archive.com/[email protected]/msg00716.html

seed registration fails at -k 51 but not -k 49

see http://permalink.gmane.org/gmane.science.biology.ray-genome-assembler/701

seed registration fails at -k 51 but not -k 49

gmane thread: http://thread.gmane.org/gmane.science.biology.ray-genome-assembler/685/focus=689

seed registration fails at -k 51 but not -k 49

I have sent a message to the end user because I could nott reproduce the issue.

seed registration fails at -k 51 but not -k 49

The problem seems to depend on the number of cores too: http://thread.gmane.org/gmane.science.biology.ray-genome-assembler/685/focus=689