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Published 20 hours ago • verified publisher icon sebhtml

Filter automatically obvious false positives in "Ray Communities" using topology

Open sebhtml opened this issue 12 years ago • 2 comments

Stakeholder: F. Raymond

sebhtml avatar Jan 09 '13 04:01 sebhtml

dependency: #146

sebhtml avatar Jan 30 '13 19:01 sebhtml

A good hit:

Odoribacter_splanchnicus_DSM_20712_uid63397 0gi|325278757|ref|NC_015160.1| Odoribacter splanchnicus DSM 20712 <kmerLength>31</kmerLength><lengthInKmers>4392258</lengthInKmers> <kmerMatches>2899432</kmerMatches>0.660123<modeKmerCoverage>8</modeKmerCoverage>

A bad hit:

Desulfovibrio_aespoeensis_Aspo_2_uid42613 0gi|317151727|ref|NC_014844.1| Desulfovibrio aespoeensis Aspo-2 c <kmerLength>31</kmerLength><lengthInKmers>3629079</lengthInKmers> <kmerMatches>4160</kmerMatches>0.0011463<modeKmerCoverage>2</modeKmerCoverage>

For profiles, the raw proportion could be used to remove false positives.

sebhtml avatar May 29 '13 19:05 sebhtml