Sebastian Deorowicz

It seems that adding -U_FORTIFY_SOURCE helps but this is rather a workaround.

Well, removing (or overwriting existing) samples is a difficult task. This is related to how agc handles contigs. Each one is split into segments (substrings of length a few (tens)...

AGC 3.1 is ready. At the moment removing/updating is not implemented. We think about some provisional implementation in one of the next releases.

Thank you. I'll integrate this in the forthcoming v.3.1 release.

Hi Rayan, AGC was designed for high quality assemblies. Nevertheless, I'm a bit surprised that you report so bad ratios, so we have to take a look at this case....

RADULS is our radix-sorter (https://github.com/refresh-bio/RADULS ). Nevertheless, in AGC we use its non-public variant (in-place radix sort). We plan to publish this variant in some time. Nevertheless, we have to...

V.3.1, which should be ready in 1-2 weeks, will support M1/M2 CPUs as well as other ARM-based machines.

AGC 3.1. is ready. Now we support M1/M2/...