sean-bam

GFF+Fasta files without line wrapping doesn't display properly

1

Hi cameron, just came across another bug where a fasta file without any line wrapping results in an empty display: Using a fasta formatted file with line wrapping works:

Hi Cameron, I just came across a small issue that took me awhile to fix. Apparently, if `clinker` is given a genbank file with only one field per CDS, say...

Thanks a ton for putting this repo together. I am working through the notebooks on Binder and noticed notebook 3.3 only has a one markdown cell. There doesn't appear to...

Selecting longest sequence as representative

2

Hi @bbuchfink - I read your preprint and am excited to try out the clustering workflow on metagenomic data. However, I wasn't entirely sure if Diamond2 can select the longest...

The option -noiupac removes good reads

2

Hey Adrian, I just noticed that using the option -noiupac seems to remove reads erroneously. Here is an example read that gets removed even though it is only ATCG: >@SRR5677815.19460357...