Simon Frost

simple.nim example does not detect SIMD type on OSX

18

simple.nim compiles and runs fine on my Ubuntu 16.04 box, but fails with the following under OSX, using either clang or gcc-7. ```sh ./simple Illegal instruction: 4 ```

I'd like to do a basic tanglegram between two trees that share some tips, stripping down the old SIV example. Is this supported in 1.0.0-alpha? I can't even get the...

Issue with running tutorial

2

Everything goes fine until the very end ``` --------------------------------------------------------------------------- ValueError Traceback (most recent call last) /usr/local/lib/python3.4/dist-packages/theano/compile/function_module.py in __call__(self, *args, **kwargs) 858 try: --> 859 outputs = self.fn() 860 except Exception:...

PeriodicKernel fails due to 'Mutating arrays is not supported'

3

If I change the kernel in [Regression - Gaussian.ipynb](https://github.com/theogf/AugmentedGaussianProcesses.jl/blob/master/examples/Regression%20-%20Gaussian.ipynb) to a `PeriodicKernel()`, I get the following error: ```julia Mutating arrays is not supported Stacktrace: [1] error(::String) at ./error.jl:33 [2] (::Zygote.var"#455#456")(::Nothing)...

Syntax for tempering?

3

To calculate marginal likelihoods via power posteriors (Friel and Pettitt 2008; DOI: 10.1111/j.1467-9868.2007.00650.x) or stepping stone sampling (doi: 10.1093/sysbio/syq085), one needs to run MCMC, sampling from $p(y|\theta)^t p(\theta)$, where t...

Fitted states for ESN?

6

While there's an `ESNpredict` function, and it's possible to add the exact input state onto the state of ESN, would it be possible to add an `ESNfitted' function that returns...

Modeling multiple time series?

4

The current ESN allows one to model multiple correlated time series, but I was wondering if one had multiple independent time series (assumed to be generated under the same process)...

Extend to count/binary data using GLMs?

4

I don't know much about ESNs beyond the basics, but I was wondering whether there are any barriers to switching from linear models to generalized linear models to allow time...

I'd like to be able to interpolate between two timepoints, where I have measurements before the first timepoint and after the second timepoint, with missing data inbetween; I could just...

I'd like to use this package to define a base container on which to add some additional code. Is it possible to add an option to set the entrypoint (possibly...