squidpy icon indicating copy to clipboard operation
squidpy copied to clipboard

Raw counts not found in the example slide-seqv2 data

Open MingzeDong opened this issue 2 years ago • 0 comments

Hi, I am trying to use the example slideseqv2 data in Squidpy, starting from raw counts. However, the returned adata has a raw.X but it is actually the preprocessed version after some lib normalization and log1p transform. I wonder if you are able to provide a new version of the data with the raw counts correctly placed in adata.raw.X. Thank you so much!

MingzeDong avatar May 31 '23 18:05 MingzeDong