fix read visium with space ranger 2.0

Open giovp opened this issue 3 years ago • 2 comments

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Description

Fix :func:squidpy.read.visium with spacerangerV2.0 update.

How has this been tested?

Closes

Sep 16 '22 17:09 giovp

close #599

Sep 16 '22 17:09 giovp

Codecov Report

Merging #600 (fb069de) into main (9a0a0ef) will increase coverage by 0.13%. The diff coverage is 40.00%.

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #600      +/-   ##
==========================================
+ Coverage   72.33%   72.47%   +0.13%     
==========================================
  Files          37       36       -1     
  Lines        5177     5064     -113     
  Branches      982      916      -66     
==========================================
- Hits         3745     3670      -75     
+ Misses       1181     1149      -32     
+ Partials      251      245       -6

Impacted Files	Coverage Δ
squidpy/read/_read.py	`37.23% <40.00%> (-1.14%)`	:arrow_down:
squidpy/im/_io.py	`66.42% <0.00%> (-0.72%)`	:arrow_down:
squidpy/_utils.py

Sep 17 '22 16:09 codecov-commenter

will close this following this conversation https://github.com/scverse/scanpy/pull/2296#issuecomment-1273309536

Oct 11 '22 12:10 giovp