spatialdata

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Related to https://github.com/scverse/spatialdata-io/issues/231 and https://github.com/scverse/spatialdata-io/pull/72. We could enable a way to merge/edit spatialdata stored objects in a modular way without having to use Python code. ## a possible example The...

LucaMarconato

Benchmark geopandas query methods

1

> A solution would be to benchmark the polygon query and bounding box implementation for points and shapes and see if one is significantly faster than the other. Ideally the...

LucaMarconato

Detach SpatialData object from its Zarr store

3

Is there an easy way to detach a SpatialData object from its Zarr store? Say I have a smallish object that fits into memory and I want to make some...

Marius1311

Respect xarray coordinates for ImageContainers

4

**Is your feature request related to a problem? Please describe.** Currently, if I parse an xarray DataArray into an image container, the coordinates are overwritten with pixel coordinates even if...

conradfoo

Opening this issue after a comment from @Felicie-Giraud-Sauveur at the scverse conference. The interpolation options for `rasterize()` and `transform()`, respectively handled here https://github.com/scverse/spatialdata/blob/3988452f433a565b0b64224d02d7e0562637f149/src/spatialdata/_core/operations/rasterize.py#L576 and here https://github.com/scverse/spatialdata/blob/3988452f433a565b0b64224d02d7e0562637f149/src/spatialdata/_core/operations/transform.py#L365 are not exposed to...

LucaMarconato

unpinning dask

5

This PR unpins dask by adding a `.attrs` accessor for both dask Series and DataFrame. It pretty much functions as a drop in replacement for the `.attrs` attribute in previous...

melonora

When writing or copying an sdata.zarr to an external disk (ExFAT format) with Mac some hidden files starting with `._*` (so called AppleDouble sidecar files) are generated that lead to...

LouisK92

[pre-commit.ci] pre-commit autoupdate

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updates: - [github.com/rbubley/mirrors-prettier: v3.5.3 → v3.6.2](https://github.com/rbubley/mirrors-prettier/compare/v3.5.3...v3.6.2) - [github.com/pre-commit/mirrors-mypy: v1.15.0 → v1.18.2](https://github.com/pre-commit/mirrors-mypy/compare/v1.15.0...v1.18.2) - [github.com/astral-sh/ruff-pre-commit: v0.11.11 → v0.14.3](https://github.com/astral-sh/ruff-pre-commit/compare/v0.11.11...v0.14.3)

pre-commit-ci[bot]

fix categories import

6

Possible solution to Issue #1009

jonas2612

Filter Operations on Label2DModel and Shape

3

Hi @timtreis @ilan-gold , I am working on this [PR](https://github.com/scverse/squidpy/pull/1011) also and thought maybe it will be smart to have the code I use there supported here because they seem...

selmanozleyen