spatialdata
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add remote support
Codecov Report
:x: Patch coverage is 95.97990% with 8 lines in your changes missing coverage. Please review.
:white_check_mark: Project coverage is 92.39%. Comparing base (4021946) to head (a0ec5be).
:warning: Report is 14 commits behind head on main.
Additional details and impacted files
@@ Coverage Diff @@
## main #971 +/- ##
==========================================
+ Coverage 92.11% 92.39% +0.28%
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Files 48 48
Lines 7429 7453 +24
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+ Hits 6843 6886 +43
+ Misses 586 567 -19
| Files with missing lines | Coverage Δ | |
|---|---|---|
| src/spatialdata/__init__.py | 96.42% <100.00%> (ø) |
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| src/spatialdata/_core/_deepcopy.py | 98.36% <ø> (-0.03%) |
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| src/spatialdata/_core/_elements.py | 92.30% <100.00%> (+0.08%) |
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| src/spatialdata/_core/_utils.py | 100.00% <100.00%> (ø) |
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| src/spatialdata/_core/centroids.py | 100.00% <ø> (ø) |
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| src/spatialdata/_core/concatenate.py | 92.00% <ø> (-0.07%) |
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| src/spatialdata/_core/data_extent.py | 97.88% <ø> (-0.03%) |
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| src/spatialdata/_core/operations/aggregate.py | 94.31% <100.00%> (-0.04%) |
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| src/spatialdata/_core/operations/map.py | 98.79% <ø> (+1.12%) |
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| src/spatialdata/_core/operations/rasterize.py | 90.03% <ø> (-0.04%) |
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| ... and 24 more |
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@ap-- @berombau been a long time coming but almost ready to get all the work in regarding remote read and write support. Will add some tests for azure still as well.
One blocker currently is that we require the newest version of ome-zarr which includes a fix that I implemented for writing images and labels on remote. The problem is that this version is only available with zarr>3. We are currently working on getting this zarr v3 support.
Awesome! And thanks for all the work 🙏 Great to see that this will be included.