spatialdata
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User documentation on different methods of benchmarking with SpatialData
Is your feature request related to a problem? Please describe. A lot of documentation is focused on one dataset or method. Method developers need to benchmark multiple datasets or methods e.g.
Benchmarking functions
- compare two segmentation models creating a Labels element
- compare two methods outputting a SpatialData object
Benchmarking pipelines
- working towards larger benchmarks
- how to benchmark on large infrastructure, HPC
- link to openproblems.bio
Describe the solution you'd like A tutorial documentation with just text on benchmarking pointing to the right resources or documentation for each type of benchmarking method.
Describe alternatives you've considered A lot of existing material exists, but there is no overview or examples specifically using SpatialData.
Additional context Benchmarking or performance analysis for developers contributing to SpatialData is out-of-scope for this issue.