spatialdata-plot
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scverse
Static plotting for spatialdata
When SpatialData has no elements and I select no elements from it, I expected it to be a valid operation. However, an error is raised: ```python from spatialdata import SpatialData...
In this pull request, I added systematic test cases for most options of `render_labels`. ## Test matrix I ran into a couple of issues with options for which I could...
Given a SpatialData with multiple labels, when rendering a single labels image with a palette matching table values assigned to it, a key error is raised. ## Example ```python import...
I would like to generate static images files from NGFF/SpatialData datasets and presets stored in their NGFF Omero metadata, so that one can preview datasets without opening them interactively in...
MRE ``` import spatialdata as sd from spatialdata.datasets import blobs import spatialdata_plot blob = blobs() ( blob .pl.render_points("blobs_points") .pl.render_shapes(na_color="white") .pl.render_images("blobs_image", alpha=0.5) .pl.show() ) ```  Correct: Shapes above points Incorrect:...
We just caught a bug in `napari-spatialdata` (described in this comment https://github.com/scverse/napari-spatialdata/pull/175#issuecomment-1793764234, but no need to read there, I will summarize here) and I just noticed that this a bug...
As long as plotting is concerned, the extent of the data doesn't need to be super precise. The `get_extent()` function has a parameter `exact=True`, which could speed up the computation...
Hello, thank you for developing such a good tool. When I followed [this tutorial](https://spatialdata.scverse.org/en/latest/tutorials/notebooks/notebooks/examples/transformations.html), I have error: ``` import math import matplotlib.pyplot as plt import spatialdata_plot from spatialdata.datasets import raccoon...
Currently, the color of a set of shapes can be set according to a column in the table, but for the outline, it's only possible to specify a single color...
