scirpy
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Add more epitope databases to `datasets`
List adapted from #54.
- [ ] The MAIT reference database with invariant CDR3
- [ ] huARdb https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkab857/6381136?rss=1
- [ ] McPAS-TCR
- [ ] PIRD
- [ ] The Adaptive Biotechnology database, used to identify (and exclude) public clonotypes shared between unrelated individuals (Dean et al., 2015)
- [ ] There might be quite some SARS-COV-2 TCR-epitope resources as well (e.g., Grifoni et al. 2021)
- [x] VDJDB
- [x] IEDB
@ausserh, how about adding your code for IEDB to scirpy directly?
More databases can potentially be accessed via biocypher. See also #404. CC @slobentanzer
am on holiday, but will address this once i am back. mcpas is included in the adapters we did at the hackathon. cc @dbdimitrov