scanpy
scanpy copied to clipboard
Plotting colors from obsm
What kind of feature would you like to request?
New plotting function: A kind of plot you would like to seein sc.pl?
Please describe your wishes
As far as I'm aware, there's no way to plot columns in obsm directly. This usually leads to copying all columns from obsm into obs and deleting them afterwards again. Being able to plot directly from obsm would make this more straigthforward. I could use MuData for these things but it feels weird to use PCs or similar as an assay in MuData.
Just to clarify: with “plot columns in obsm”, you mean sourcing colors from there specifically? Because the issue text doesn’t emntion colors, while the title does!