pymol-open-source

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In `pymol-open-source` `2.5` and `3.0`, when I load the [1c1v](https://www.rcsb.org/structure/1C1V) PDB file and try to select a missing residue, ``` fetch 1c1v select ch_r150, chain H and resi 150 ```...

chmnk

cannot build

2

OS: Alamlinx 8.7 Prolem: Cannot build when I ran "python3 setup.py install", some error messages came out as below: ---------------------------------------------------------------------------------------------------------------------------- layer1/SceneView.cpp: In member function ‘glm::mat4 SceneView::toWorldHomogeneous() const’: layer1/SceneView.cpp:88:27: error: ‘translate’...

james-yj

Announced via [RSCB news](https://www.rcsb.org/news/feature/65a1af31c76ca3abcc925d0c#:~:text=As%20of%20July%202%2C%202024,compressed%20BinaryCIF%20(BCIF)%20format). " From July 2024 the PDB file archive will not be offered in the compressed MMTF format anymore. Users are strongly encouraged to switch to the...

JarrettSJohnson

Use XDG directories instead of HOME to store plugins data and recent files cache

1

jrom99

Forwards better plugins

11

My initial attempt to improve the plugin command extensions. Related to: https://github.com/schrodinger/pymol-open-source/issues/347

pslacerda

Loading .cif files makes pymol get stuck

1

When running a python script with the pymol module containing the load of .cif files, it gets stuck with message " ExecutiveLoad-Detail: Detected mmCIF" forever.

MarioAsti8

Hi, This is a feature request to incorporate support for the Binary CIF format, as RCSB PDB will cease to provide PDB data in MMTF format after July 2, 2024....

giagitom

Renewed plugins

15

In my opinion, extended PyMOL commands should be both more friendly and strict. This is a proof of concept: ```python from pathlib import Path @declare_plugin def f(a: int, b: Path='/tmp/'):...

pslacerda

pymol --testing destroys SingletonPyMOLGlobals

2

## Summary Looks like the C++ tests can destroy `SingletonPyMOLGlobals`. I suspect since 4e3097fa10b4ed495b5638f19bde6de29ffd5c19. ## Steps to reproduce * `pymol --testing` ## Observed output ``` python: layer1/P.cpp:1914: void PInit(PyMOLGlobals*, int):...

speleo3

Hi, in order to create images containing volumes but to keep the benefits of ray tracing the molecules we want to use the _ray_volume_ setting as explained [here](https://pymolwiki.org/index.php/Volume). While this...

Finnem