pymol-open-source

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apt-get install pymol automatically installs with python2.7,

1

I tried installing the package in mac with brew install brewsci/bio/pymol I was able to import pymol in python3, but when I tired to install it in ubuntu machine using...

amina11

Residue selection using the laser pointer of VR controllers

5

To the best of my knowledge, it is not currently possible to select a residue by pointing the VR controller's laser directly at the target (akin to clicking with the...

Nargaruga

refactoring shortcut.py script

3

ye11owSub

Opening .glb files

1

Does PyMOL read .glb files? I am trying to import some structures from the AlphaFold Protein Structure Database and my PyMOL keeps crashing. I'm not sure whether the problem is...

cellbiosarah222

Resolution problem with Pymol

1

Hi there! I'm new to Pymol and I've been using it to visualize protein interactions. I saved my session as a .pse file. However, every time I reopen the saved...

philong59

Pymol surface error

5

I am experiencing issues with rendering surfaces on PyMOL version 2.4.1. The issue is when I attempt to show the surface of a protein the app crashes without any explanation...

rnflood

Why I need to use `"pmg_tk.startup.XDrugPy"` when testing for `__name__` when loading plugins? I test for `__name__` because I can't use `pymol.Qt` from command line scripts. ```python if __name__ in...

pslacerda

fixing ci pipeline for python3.13

1

- [adding libffi to windows ci pipeline](https://github.com/schrodinger/pymol-open-source/pull/435/commits/5db731467192d0a2e07720b5c1f3d894c39afbf0) - I have encountered an error in CI for the Windows platform([example](https://github.com/schrodinger/pymol-open-source/actions/runs/13354211427/job/37294680115)). For more information on the solution, check [this link](https://stackoverflow.com/questions/73458524/importerror-dll-load-failed-while-importing-ctypes-the-specified-module-coul/76791146#76791146). - [bump...

ye11owSub

BUG `read_pdbstr` cause program to sleep forever

1

## Describe the bug Yesterday I found my calculation was not started after 11 hours. I spend a whole day trace down the problem and found it is caused by...

shaoqx

WIP: chempy refactoring

9

- [adding tests for chempy.cpv](https://github.com/schrodinger/pymol-open-source/pull/433/commits/0251d8130f8a47dcaabd1a118497c5e31da73127) - Compares the results from `cpv.py` and Numpy and shows their interchangeability

ye11owSub