pymol-open-source

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Some include paths missing when building in RHEL 8.4

1

After installing the necessary dependencies ```console sudo yum install -y subversion gcc gcc-c++ kernel-devel python3-devel glew-devel freeglut-devel libpng-devel freetype-devel libxml2-devel ``` when building in RHEL 8.4, I had to include...

vascoosx

How to compile with VTKM support?

7

Hi, I'm having problems compiling PyMol with VTKM support. I downloaded version VTKM 1.5.1 and compiled it. Which is the correct way to link this library?

giagitom

How to use geomery parameter with 'attach' command?

2

I just can't understand at all what is possible values and where I can get any reference about using this value. So I cannot understand how to use it correctly....

Glucksistemi

No module named pymol

2

Hi, I install the pymol on mac through brew but when I try to import it from python, it says no module named pymol. How can I fixed this?

TianmingQu

Electrostatic potentials at surface: what does ramp_new do exactly?

1

I am working with APBS calculations on a set of interesting proteins. Briefly, what I want is an _explicit_ representation of the potential at the protein's solvent accessible surface area—that...

eloyvallinaes

Automatically update selection based on frame

1

Hi all, I am trying to solve pretty much the same problem as issue #218 - also updating the selection to only display molecules which are in contact on a...

cyril-schroeder-ox

Create selection by state

1

Hello, I was wondering if it is possible to create a selection from the python API that changes with the state of the object. In my case this will be...

AlessioDelConte

it seems relative to x11, but I am not sure. the first time, I complied the pymol from the source the second try, I installed it by conda but did...

lyw8120

PyMOL traceback error when building residues

1

Hi, I'm a student using pymol for a biochemistry course and have been having some recent issues with the program. When I attempt to build a residue by navigating to...

mtelia

Import Error (chempy): conflict with chempy from pip

2

Hello, upon importing pymol, I get an ImportError related to chempy import pymol ImportError: cannot import name 'io' from 'chempy' I installed pymol from latest git, Importantly, I have (and...

jfmoulin