Scott Christley

non-ASCII characters in README causes install to fail

5

``` $ python3 --version Python 3.6.9 $ pip3 install petname Collecting petname Downloading https://files.pythonhosted.org/packages/8e/a5/348c90b3fb09d7bd76f7dacf1b92e251d75bfbe715006cb9b84eb23be1b1/petname-2.6.tar.gz Complete output from command python setup.py egg_info: Traceback (most recent call last): File "", line 1,...

launcher runs too many jobs when using multiple nodes

3

I filed a TACC ticket (Ticket #43327) as I don't know if this is a launcher bug, or just an issue with TACC's current version of launcher. > I'm using...

launcher for stampede2

7

I'm porting my applications from TACC's stampede to stampede2 system. I'm using launcher 3.0.1 and getting these errors on stderr: ``` Ncat: Invalid -d delay "c405-132" (must be greater than...

python error when using airr.read_rearrangement with gzip file

1

When using `airr.read_rearrangement` on a gzip file, get this error ``` Traceback (most recent call last): File "", line 1, in File "/usr/local/lib/python3.8/dist-packages/airr/io.py", line 89, in __next__ row = next(self.dict_reader)...

version number in spec files is not correct for 1.5.x

18

Both of the AIRR schema spec files say "1.4" when should be "1.5". Because the master branch has already moved significantly towards 2.0, I've created a `release-1.5` branch starting from...

initial airr-js package

6

- [ ] finish I/O routines - [x] add tests - [x] API documentation? - [ ] npm account, publish, update release procedures - [ ] consolidate test/data into common...

Initial moves to OpenAPI v3

10

Start building the base so we only need to edit the OpenAPI v3 spec, and the v2 spec can be generated from v3. Also clean up the test suites so...

AIRR could use a specification of mutations counts/frequencies and maybe aggregates

1

Ok, I admit it, @javh was so [optimistic](https://github.com/airr-community/airr-standards/issues/739#issuecomment-1975412902) about being feature complete that I couldn't help tossing this out. ;-) The specification is not particular hard as the Immcantation suite...

Another useful and potentially simple extension of the `Rearrangement` fields, `cdr3_charge` and so on.

deprecate openapi v2 for v3

10

- [ ] Currently, the PR check converts the v2 schema into v3 then compares with jsondiff. Swap this so v2 is generated from the v3 schema. - [ ]...