schraderL

Hi! Thank you for this cool tool! I hope you can help me figure out what's going on here. **Are you using the latest release?** I'm using. 1.8.11 **Describe the...

Hi! I am using cd-hit to cluster de novo repeats from repeatmodeler. I am thinking about ways to do more with the identified clusters than just keeping one representative. So...

low RAM & CPU efficiency on slurm

1

Hi, I am running `diamond blastx` on some individual eukaryotic scaffolds on a HPC environment with `slurm` with the following settings: ``` diamond blastx \ --query ${assembly} \ --db uniprot/reference_proteomes.dmnd...

funannotate update, kallisto error

1

Hi, I am running into an error with `funannotate update`, trying to add UTRs to existing CDS annotations. It looks like it is an issue with `Kallisto` finding duplicate fasta...

no gap-filling in "scaffold" mode?

11

Hi again! I have now run dentist successfully a few times and tested the different join policies, using as input the raw contig assembly or a scaffold assembly, scaffolded with...