Sam Chorlton

Tag a release?

1

Hi @wwood, thanks for the fantastic tool. What are your thoughts on tagging a release to get some of the work you've done onto bioconda and compiled packages? Eg. looking...

Dockerfile/pangraph not building

1

```bash wget https://github.com/neherlab/pangraph/archive/refs/tags/0.5.0.tar.gz tar xzvf 0.5.0.tar.gz cd pangraph-0.5.0 docker build . -t pangraph/pangraph ``` ```bash # All requested packages already installed. ERROR: InitError: PyError (PyImport_ImportModule) NameError("name 'ListType' is not defined")...

Hi, Thanks for your awesome work. Like original minimap2, is it possible to use a precomputed index (instead of FASTA file) with mm2-fast to save time? Eg. in original minimap2,...

Enhancement: Handle paired reads automatically

1

Currently, the user has to create a list of dataset paired-end reads manually by dividing the reads for each sample between pair 1 and pair 2. Galaxy automatically does this...

Enhancement: enable bulk addition of files to collection

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Currently, if files are to be added to a collection, the plus icon has to be clicked for each file. There should be a bulk selector and select all button...

Feature request: BUSCO-formatted output

1

Thanks for the awesome tool! This is more a feature request - if the goal is to have a better/faster version of BUSCO, it would be helpful if the outputs...

**Issue:** Working with GATK 3.8 is a hassle. It requires download the jar and registering it separately due to licensing issues. This limits the ease of installation and distribution of...