Philipp Schlegel
Philipp Schlegel
1. Calculate connectivity distance matrix 2. Cluster into simplices [see Giusti et al., Journal of Computational Neuroscience (2016)] 3. Collapse network
![pymaid_example](https://user-images.githubusercontent.com/7161148/41200598-86b3640c-6c9f-11e8-84b2-b7cf2668d2ec.gif)
See here: https://marcobonzanini.com/2015/02/25/fuzzy-string-matching-in-python/
See [here](http://webcache.googleusercontent.com/search?q=cache:jKnues79nQQJ:merwanachibet.net/blog/blender-long-running-python-scripts/+&cd=8&hl=en&ct=clnk&gl=uk) for an example.
- mapping between CATMAID and tile coordinates - basic cutting and stitching (PIL?)
Kaleido is an algorithm to optimise assignment of random colours using the neurons' average distance to each other. See "Kaleido: Visualizing Big Brain Data with Automatic Color Assignment for Single-Neuron...
`find_skid` is essentially a visualisation of a neuron's history based on logs. Could add this functionality as part of pymaid.user_stats module?
Just copy paste code from `get_urls_threaded`
- make .plot3d return custom class that allows adding/removing of neurons - make .plot3d search for existing vispy canvases Also: rotate object by default