Salvador Capella

icon company Barcelona Supercomputing Center (BSC) | Spanish National Bioinformatics Institute (INB) | ELIXIR Tools platform icon location Barcelona, Spain

Results 18 comments of Salvador Capella

statal - alphabet distribution report

I like this idea - I'll work on implementing it in the coming days.

Redundant asignation on Sequences Matrix = operator

Obviously it seems like a bug but ... shouldn't it be? `matrix[i][j] = old.matrix[i][j];`

trimal.exe has stopped working message

Hi there, Would it be possible to use your alignment for testing trimAl. So far I have used it with 5GB data alignment and trimAl has processed it. My initial...

Join the team (post here to be added)

Happy to join to the RO-crew!

terminalonly issue

Thanks for raising this aspect - I just managed to reproduce your example and added an additional parameter `-htmlout issue_110.html` so I can visually inspect the output file. Looking at...

terminalonly issue

Thanks for validating the answer. I'd argue that this functionality existed before CLipKIT was first published. Still, I'd like to give it a go and implement something similar to "ends-only."...

terminalonly issue

@nicodr97 shall we try to incorporate it natively into the current codebase? It seems doable, considering how terminalonly works

Update sequence coordinates after trimming gappy ends

Thanks, Evangelos, for using trimAl - If I understood your request well, you would like to see the coordinates updated **when trimming the beginning/end** of an MSA, right? Otherwise, it...