scalavision

Would it be possible to make cromwell available as a maven dependency? There are a lot of very useful utilities with regards to `wdl` parsing etc. It would be amazing...

Trying to package jep for nixpkgs yields ModuleNotFoundError: No module named 'jep'

3

nixpkgs uses absolute paths and symlinks, and I try to patch the `jep` script as follows: ```bash #!/bin/sh VIRTUAL_ENV= export VIRTUAL_ENV LD_LIBRARY_PATH=/nix/store/wkw6fsjasr7jbbrlakxxpbiapa8hws42-python3-3.8.7/lib:/nix/store/wkw6fsjasr7jbbrlakxxpbiapa8hws42-python3-3.8.7/lib/python3.8/site-packages:/nix/store/b71ldqi7p76f12rs6px69vba1przxzil-jep-3.9.1/lib/python3.8/site-packages/jep; export LD_LIBRARY_PATH LD_PRELOAD="/nix/store/wkw6fsjasr7jbbrlakxxpbiapa8hws42-python3-3.8.7/lib/libpython3.8.so"; export LD_PRELOAD if test "x$VIRTUAL_ENV"...

no tmp dir created when generating 3-way "venn" diagram

3

I get this traceback when trying to run intervene venn with 3 vcf files: ``` Traceback (most recent call last): File "/opt/anaconda3/bin/intervene", line 606, in main() File "/opt/anaconda3/bin/intervene", line 522,...

DatePicker window freezes when $scope.date is set in controller

3

Hi, Thanks for such a great DatePicker !!!!! It seems I have problems getting it to work when presetting the date... Defining the directive like this:

I get a security warning when using electron in nixpkgs for versions 3 and 4, but the debugger seems to run. I am not able to make it run for...

Is it possible to use /usr/bin/env bash instead of /bin/bash?

5

Or maybe provide a flag to switch the default? I get this error when running the hello world example from docs on nixos: ``` cromwell.core.CromwellFatalException: java.io.IOException: Cannot run program "/bin/bash":...