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                                            scachero

C stack usage ... is too close to the limit when running RunTSNE

Hello, I am having the same issue. Please let me know if there is a fix! Thanks Sebastian

Calling SNPs using multiple bam files with single cell data

Thanks a lot for the answer! So i should use '-S bamfile1.bam bamfile2.bam' to specify multiple bams and then i make a barcode tsv file for each bam adding -1...

Calling SNPs using multiple bam files with single cell data

But how can cellsnp-lite assign in cases of barcode duplications between bams? My understanding is that the bam file has the barcode sequence but not the suffixes. This would mean...