pyKNEEr

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How to replace reference image?

1

Hello Serena, I wanted to ask how one should replace the reference images in pykneer for pig subjects which I'm trying to do for my Master thesis project.

Garimadi

Run preprocessing on my DICOM Data

3

Hi @sbonaretti , My name is Tiago and I am using pykneer for getting T2mapping. I convert the `preprocessing.ipynb` into a python file, and it runs the DEMO data. However...

ZemaTimoteo

preprocessing.ipynb script error and T2 Maps

1

Hello. My name is José and I am PhD student studying the decay of the T2 and T2 * signal of cartilage in patients with ligament injury. Using this software,...

JosCoelho

Dear Dr. Bonaretti, I have been working with pyKNEEr and I have had some success and some difficulty. Of about 20 images that I wanted to automatically segment, about half...

ryancrossbow

Calculation of T2 maps

3

Hi Serena, Im using my own set of images and am in the relaxometry step. Right now i only had one data set of the studies, so im not sure...

FroylanZR

ITK widget + intensity standardization

9

Hi, in the step 3D MAP: Interactive rendering of 𝑇2 maps i keep getting the Error displaying widget: model not found. I already installed npm and nodejs and ran the...

FroylanZR

Hey @sbonaretti Super cool package & nice paper! We were looking at it today during the a repo-hack: https://www.reprohack.org/event/28/ Unfortunately, we didn't have time for a full reproduction & review,...

jluethi

morphology_functions.py question?

1

HI, Do you know why I will receive the below error message with 01_cubeQuant_01_prep_fc.mha, there is no problem with 01_DESS_01_prep_fc.mha. With 01_cubeQuant_01_prep_fc.mha (but not 01_DESS_01_prep_fc.mha), I will see Somewhere around...

ylim99