libsbgn
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sbgn
Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++
we should have utility classes that make it easy to specify color / font information.
It was mentioned that we don't have enough examples currently, and that we should have examples specifically how to mark duplicate elements (clones). Also an example on how to modify...
Dear developers, I am trying to compile the c++ binding for libsbgn while I found the schema http://sbgn.org/libsbgn/0.2 and http://sbgn.org/libsbgn/0.3 do not exist anymore. I then switched all links to...
Implement a submap. A test-case is already available. Reported by: amarillion
What we have not specified here is more information about alignment, font, and fontsize. So right now it would be left to the tool how to render the text inside...
 In SBGN, 3 different notations are allowed for state variables (cf attached screenshot) The first two representation are covered by the current proposal. The third one isn't. That third...
The label of unit of information is made of two text components, always separated by a ":" Similarly to state variables type 2, the label should probably be replaced by...
It would be great if we could also associate a mime type with it. Perhaps: application/sbgn this will allow us on all operating systems to associate applications with it. The...
The geometry of a number of glyphs is underdefined when described only as a bounding box. Non exhaustive list of affected glyphs: (add more in comments?) - macromolecule - complex...
Falk Schreiber: A clone marker can be of different size (up to 15% of the node I think), this should be included too. Reported by: amarillion