Sébastien Besson
Sébastien Besson
Taking the output of `bioformat2raw 0.3.0` which is a collection of OME-Zarr multiscale images as an example: ```bash bioformats2raw "test&series=2.fake" "test.zarr" (zarr) [sbesson@pilot-zarr1-dev ~]$ ome_zarr info test.zarr/ (zarr) [sbesson@pilot-zarr1-dev ~]$...
Backported from a private PR This addresses an edge case where the [ReferenceBlackWhite](https://www.awaresystems.be/imaging/tiff/tifftags/referenceblackwhite.html) TIFF tag is read as an array of floats. In the majority of the TIFF-based samples this...
Backports the FileSticher change discussed in https://github.com/IDR/bioformats/pull/23 so that this API change has more testing exposure. As the `FileStitcher.setReaderClassList` recreates a new `reader` stack, this adds a preemptive `reader.close()` statement...
Using the [public samples](https://downloads.openmicroscopy.org/images/Leica-XLEF) uploaded as part of the work on #3747, an error occurs when reading the binary data of the last series of the `lif/dimension tests LIFs/XYZCS.lifext` sample...
The new Slidebook7 reader introduced in #3731 works fine when being used by Bio-Formats command-line tools and the provided sample file is being tested daily by the repository tests. However,...
This PR extends the scope of the `omero.cmd.Duplicate` integration tests to: - test the duplication of all OMERO shapes rather a handful of them - `Label`, `Mask`, `Polygon` and `Polyline`...
As discussed on Monday Formats meeting, this is the minimal configuration change that should allow the nightly OME CI builds to start testing Bio-Formats on JDK 17 in addition to...
As of 0.16.0, this repository includes some minimal infrastructure to spin up a Nexus container and initialize a default `maven-internal` repository which can be used by the various Java building...
See https://github.com/sonatype/docker-nexus3/commit/bd57ceec2a0f374f1c2a112177186ab7a949e8bf Recreating the nexus service (likely after repulling) led to issues when trying to authenticate to populate the repository. While the password was previously assumed to be `admin123` (and...
Makes sense & +1 for keeping things in sync. Can certainly see an upcoming round of bumping to 12 if not 13 across the board. _Originally posted by @joshmoore in...