Satrajit Ghosh

icon indicating a website link https://satra.cogitatum.org

icon company MIT icon location Cambridge, MA, USA icon location My research interests span computer science and neuroimaging, in the areas of applied machine learning, software engineering, and clinical applications.

Results 500 comments of Satrajit Ghosh

Use nibabel instead of freesurfer for conforming and unconforming

@kaczmarj - looks like the hdr is not being set when the new image is being created.

Use nibabel instead of freesurfer for conforming and unconforming

also i think it would be great if this was something that was written without tensorflow and could be included in nibabel itself.

Use nibabel instead of freesurfer for conforming and unconforming

@kaczmarj - i think @oesteban, @mgxd added/is adding transformations to nibabel which would likely have interpolations in it.

Use nibabel instead of freesurfer for conforming and unconforming

thanks for chiming in here. it would be great to get a common conform step. i think we can update the nibabel conform to include additional keywords to make it...

the kwyk container with master-gpu tag has errors

don't you need `--nv` to run the gpu version?

nipype_display_crash could default to the last *pklz file in a directory

wouldn't hurt - but then the function should display the crash file name as well. also there is nipype_crash_search which may be useful as well.

mime type / encoding format conventions

> for which files are you thinking of adding a mimetype? @joshmoore - same as @jhamman . in our archive we are using nesteddirectorystore hosted on s3 as an asset....

mime type / encoding format conventions

ping @yarikoptic

mime type / encoding format conventions

there have been several efforts : https://www.w3.org/2002/12/cal/rfc2425.html and various vendor specific things including directories on android: `vnd.android.cursor.dir` but nothing looking at the type of directory based stores that we are...

Adding Zarr adopters on our website

you can pull the dandi logo from here: https://raw.githubusercontent.com/dandi/artwork/master/pics/dandi-logo.svg Blurb: Zarr is currently used by DANDI for lightsheet microscopy and some ex vivo MRI datasets, and is being considered as...