Satrajit Ghosh

also do take a look at the latest iterations of FSL interfaces as they simplify almost everything into the specs, and in many cases even output spec may not be...

i think this may have been partially was addressed in #220. i would close this for now.

@cmungall - the parse_directory_digest just parses a string. it just validates each different type of multiple supported digests.

i can't replicate this with the current released version of pydra (0.23 on python 3.11.8 on macos m1). here is a simplified form of the code. ```python from pathlib import...

the above code reads any number of files in your current directory, so just make sure it's not a lot!

also i wasn't sure how the second function runs without an input for the `smoothed_image` arg. in normal python that wouldn't work. do we default positional args to optional now?

are you unable to run my version of the code either? and are you using the current released version or the main branch?

@tclose - if you right click on the md file and open as notebook that should give you the notebook interface. it's possible given when these files were created that...

@sierra-moxon - it seems `biolink:type` is simply `rdf:type`, which for `Gene` would be the class it belongs to, whereas i think @puja-trivedi was asking how to encode some aspect of...

perhaps add that as a more generic utility function, and the api can use an enum like `AUTO_TUNE_BATCH` to indicate whether that function should be called or the provided batch...