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How to represent a gene's biotype

Open puja-trivedi opened this issue 1 year ago • 2 comments

Is your feature request related to a problem? Please describe.

  • I want to represent the concept of a gene's function/classification (also known as a gene's Biotype).

Describe the solution you'd like.

  • Add biotype as an attribute of biolink:Gene
  • Add a class biolink:BioType

What working group (or team) did this request originate from? The need for representing this type of data originated from the MIT Senseable Intelligence Group.

puja-trivedi avatar Jun 30 '23 18:06 puja-trivedi

Hi @puja-trivedi -

biolink:Entity has a biolink:type slot that holds a uriorcurie (preferably an ontology ID) that can be used to describe the type or subtype of the entity.

Will this work for your use case?

sierra-moxon avatar Jul 06 '23 22:07 sierra-moxon

@sierra-moxon - it seems biolink:type is simply rdf:type, which for Gene would be the class it belongs to, whereas i think @puja-trivedi was asking how to encode some aspect of the function of a Gene.

satra avatar Jul 07 '23 19:07 satra