seurat-wrappers
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satijalab
Community-provided extensions to Seurat
Hello, I just tried the tutorial and met the below issue. Any suggestions? Thanks! K >con integrated close(con = con) >DimPlot(object = integrated, group.by = c("orig.ident", "ident")) >cds sessionInfo() R...
dsb is an R package for normalizing ADT data. manuscript: https://www.nature.com/articles/s41467-022-29356-8 CRAN: https://CRAN.R-project.org/package=dsb github: https://github.com/niaid/dsb We would like to add dsb to Seurat wrappers. Please let us know if we...
Dear Seurat developers, I am finding quite the trouble to properly set up "SeuratWrappers" as **Suggests** in my in-development R package. For this, since it is a github package, I...
Hello, I'm having an issue with RunVelocity failing on a 2048GB highmem machine (originally tried on 256GB). This seems similar to https://github.com/satijalab/seurat-wrappers/issues/21 and#116 . Any advice would be much appreciated!...
Hi, I tried to install the package, but encountered the error below. Would you mind advising on how to proceed? Thank you! ``` > remotes::install_github('satijalab/seurat-wrappers') Downloading GitHub repo satijalab/seurat-wrappers@HEAD Error:...
Hi I am encountering this error while trying to install Seurat wrapper for monocle3. I have seen other people facing the same issue but have not seen any solution being...
I am having this kind of error I have checked if my data (ad)'s assay have non-unique cell name but it was not. Can I get some information to fix...
Hello. I would like to add the main functions of CIARA (https://cran.r-project.org/package=CIARA) to Seurat wrappers
Hello, I'm trying to use RunPrestoAll(), but I'm getting warnings that end up in no DE being detected. I'm creating a Seurat object `SmallRO` following the vignette and doing SCTransform,...
