seurat-object
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satijalab
Suggestion: I think it would be good to see a warning if the cell names in the counts matrix and the metadata do not match.
I'm seeing this report in CRAN checks: ``` Package: scCustomize Check: whether package can be installed New result: WARNING Found the following significant warnings: Warning: replacing previous import ‘Seurat::%||%’ by...
I am trying to create a seurat object from the available files from https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5596828. The data that is available to create a seurat object from Sci-sequencing data are the counts...
Hello, This is a 2-in-1 issue (A, B). I am trying to rename genes in Seurat. I know you [principally disagree,](https://github.com/satijalab/seurat/issues/1049) however I need it. For that end, I: `obj...
Hi, I'm following the tutorial "Introduction to scRNA-seq integration". I have already installed the dataset ifnb, but when I try to Load the dataset using LoadData("ifnb"), the error message pop...
When using `AddMetaData` to add metadata columns via a `data.frame` object, the resulting added columns contain only `NA`s instead of the actual data. ```r library("Seurat") dims
` Error in parse(outFile) : /tmp/RtmpafO9XW/Rbuild84c567e69b58/SeuratObject/R/assay5.R:108:13: unexpected input 107: expr = Layers(object = object, search = layer), 108: error = \ `
Doing operations on layers with same number of features and cells results in missing feature overlap issue (seuratv5 branch): ```r set.seed(seed = 1) dummyexpMat
Since there is a `RenameCells()` function, it would be helpful to also have a function to rename features. The current [advice](https://github.com/satijalab/seurat/issues/2617) is to create a new assay object with renamed...
Had a part of my script that looked like this: ``` all_objs
