seurat-object
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satijalab
After updating my R Studio to version 4.3.2, and the package "Matrix" to version 1.6-1.1, I have problems reading rds files with readRDS(). I am using the developer Seurat version...
Hi Seurat Team, Before attempting PR on this (which would be slightly more complicated than what I've done before) I wanted to just inquire about whether this is something that...
Dear Seurat Team, I used `FetchData(object = obj, vars = "UMAP_1")` to retrieve UMAP coordinates in [`Seurat.utils::AutoNumber.by.UMAP()`](https://github.com/vertesy/Seurat.utils/blob/42932b887699153ee3435891add7484fd08038e2/R/Seurat.Utils.Visualization.R#L2816). This worked until Seurat v5. After Seurat v5 it still executed without a...
When trying to add feature metadata to Seurat v5 object using the nromal SeuratObject::AddMetaData() you get the following error ``` Error in `LayerData
Hi Seurat Team, This PR is definitely something optional and totally fine if rejected. Recently, I have been updating scCustomize to work with new version of liger which has substantial...
Use the package version of SeuratObject instead of Seurat in `UpdateSeuratObject()`; this allows running `UpdateSeuratObject()` without requiring Seurat to be installed
Hello, I have been running an analysis in Seurat 5 that is partially run on a local machine and a remote server, and I've been trying to work out how...
Seurat and SeuratObject 5.0.1 installed from CRAN. Attempting to merge SeuratObjects with "collapse=TRUE" results in error "Collapsing layers is not yet supported". I can see also in the current GitHub...
Since I updated Seurat from v4 to v5, I kept getting this error message when I was loading Seurat: `library(Seurat)` > Loading required package: SeuratObject > Loading required package: sp...
Thank you for getting to my issue I'm encountering an issue while attempting to subset my Seurat object and subsequently splitting it. The error message I'm encountering is as follows...
