sarahet
sarahet
I don't think that the different filters should give different results. First of all, the read mapper should have full sensitivity according to my parameter settings and full sensitivity is...
This problem seems not to appear when using the old code path (-tc 0).
Just to mention this happened to me also with another dataset with sequences of the same length producing more than 100 duplicates. Do I miss some option that has to...
As far as I understand it (and also tried) -m controls the maximum number of best matches which means that if I set the sensitivity to 100% - and want...
ELAND format would also only give me one record per read but I want the exact positions and mismatches of all possible matches
So I tried it again to make sure that I was correct and indeed setting -m 1 results in a single match output for each read which is not my...
Yes that's what I'm doing at the moment :) I just thought it would be good to report it!
What do you mean concerning "lack enough mapping details"? In general they can't be mapped in different ways to the same region as I used the no-gap parameter which means...
Can this be closed or are there any more open problems concerning the taxonomy files?
Hi @bfowle, Thanks for reporting this. Did this happen with lambda2 or lambda3? I will have a look at it then. Sara