sapuizait

retrieve hits that are identical match to the query?

2

Hi there, I have been trying with diamond blast to perform searches that will output only identical hits (100% identical no mismatches) What I have tried so far is to...

cannot open temporary file

8

I am trying to run diamond blastp using as query some really big protein fasta files (300-900MB). Of course in order to achieve that, i usually split the files in...

querry with multiple hits interpretation

3

Dear all This is not an issue, its more of a question about the results i get when I run the eggnog emapper. At the output table, when i look...

First of all thank you for your wonderful software! I ve been trying to run it on MAGs from metagenomes on a slurm server. Installation was done with conda and...

very very large dataset recomendations

2

Hi all As the title says, i have a very large dataset or 1500 genomes that share 1200 single copy genes. The plan is to build a concatenated alignment (lets...

Question about scaling propr to very large data sets (Part 2)

11

Hi all First of congrats on your wonderful software, just read about it and it looks very promising. I have a question/request. I have two datasets (coming from the same...

file is too short for prediction?

1

Hi again Sorry for the multiple threads but there are 2 different issues. This is sth that prevents me from running the software. I am trying to run rfplasmid on...

Hi there I would like to run the rfplasmid on E.coli genomes. I saw you mention them but i cannot find a model. Is it an upcoming feature or is...