circlator
circlator copied to clipboard
Assembler canu run gets terminated
Hello, I am trying to run circlator using canu (v 1.9)as the assembler
circlator all --assembler canu ~/Desktop/CANU/KU15176/assembly/KU15176.contigs.fasta ~/Desktop/CANU/KU15176/corrected_KU15176/KU15176.correctedReads.fasta.gz ~/Desktop/Circulator_KU15176CANU
however the run gets terminated and I am getting the following error:
Traceback (most recent call last):
File "/usr/bin/circlator", line 58, in
Can anybody help me on this? your assistance will be greatly appreciated. Thank you very much!
Now that contigs.gfa got removed. The contigs.gfa
file has not been generated since Canu v1.9
, downgrading canu should fix this error. see circular contigs and contigs.gfa #1551