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Published 20 hours ago • verified publisher icon sanger-pathogens

A cluster failed !! Any help would be great

Open MariaPerezVazquez opened this issue 2 years ago • 1 comments

I am running ariba as follows

ariba run ../get_prep_ref/resfinder/out.resfinder.prepareref ../../preprocessing/K13657/K13657_R1_filtered.fastq.gz ../../preprocessing/K13657/K13657_R2_filtered.fastq.gz K13657/out.resfinderK13657run And I get the above error ariba.clusters.error: at least one cluster failed! stopping...

MariaPerezVazquez avatar Mar 01 '22 15:03 MariaPerezVazquez

I had the same issue when using a different program with ariba. But I just managed to make it worked when i downgraded bcftools!

ariba=2.14.6
bcftools=1.12

lexleong avatar Jun 04 '22 00:06 lexleong