sanger-pathogens
Perl error
Dear developer
My perl latest version "This is perl 5, version 32, subversion 1 (v5.32.1) built for darwin-thread-multi-2level" So, when i install roary it have some problem with perl vesion. Pls help me fix
(311) nguyen@Mr8-2 ~ % conda install roary Channels:
- r
- conda-forge
- bioconda
- defaults Platform: osx-64 Collecting package metadata (repodata.json): done Solving environment: failed
LibMambaUnsatisfiableError: Encountered problems while solving:
- package perl-padwalker-2.5-pl5321h5fa12a8_5 requires perl >=5.32.1,<5.33.0a0 *_perl5, but none of the providers can be installed
LibMambaUnsatisfiableError: Encountered problems while solving:
- nothing provides libgcc-ng >=4.9 needed by quast-4.6.3-py27pl526h3727419_2
Could not solve for environment specs The following packages are incompatible ├─ pin-1 is installable and it requires │ └─ python 3.11.* , which can be installed; ├─ quast is installable with the potential options │ ├─ quast [5.2.0|5.3.0] would require │ │ └─ perl >=5.32.1,<5.33.0a0 _perl5, which can be installed; │ ├─ quast [4.4|4.5|...|5.2.0] would require │ │ └─ python [2.7 |>=2.7,<2.8.0a0 ], which conflicts with any installable versions previously reported; │ ├─ quast 5.0.1 would require │ │ └─ python >=3.5,<3.6.0a0 , which conflicts with any installable versions previously reported; │ ├─ quast [5.0.1|5.0.2|5.2.0] would require │ │ └─ python >=3.6,<3.7.0a0 , which conflicts with any installable versions previously reported; │ ├─ quast [5.0.2|5.2.0] would require │ │ └─ python >=3.7,<3.8.0a0 , which conflicts with any installable versions previously reported; │ ├─ quast [5.2.0|5.3.0] would require │ │ └─ python >=3.10,<3.11.0a0 , which conflicts with any installable versions previously reported; │ ├─ quast [5.2.0|5.3.0] would require │ │ └─ python >=3.12,<3.13.0a0 , which conflicts with any installable versions previously reported; │ ├─ quast [5.2.0|5.3.0] would require │ │ └─ python >=3.8,<3.9.0a0 , which conflicts with any installable versions previously reported; │ ├─ quast [5.2.0|5.3.0] would require │ │ └─ python >=3.9,<3.10.0a0 , which conflicts with any installable versions previously reported; │ ├─ quast 5.3.0 would require │ │ └─ python >=3.13,<3.14.0a0 , which conflicts with any installable versions previously reported; │ └─ quast 4.6.3 would require │ └─ libgcc-ng >=4.9 , which does not exist (perhaps a missing channel); └─ roary is not installable because there are no viable options ├─ roary 3.7.0 would require │ └─ perl-bioperl-core <1.7 but there are no viable options │ ├─ perl-bioperl-core 1.6.924 would require │ │ └─ perl >=5.22.0,<5.23.0 , which conflicts with any installable versions previously reported; │ └─ perl-bioperl-core 1.6.924 would require │ └─ perl 5.22.0* , which conflicts with any installable versions previously reported; ├─ roary [3.10.2|3.12.0|3.8.0|3.8.2|3.9.1] would require │ └─ perl 5.22.0* , which conflicts with any installable versions previously reported; └─ roary [3.12.0|3.13.0] would require └─ perl >=5.26.2,<5.26.3.0a0 , which conflicts with any installable versions previously reported. ├─ perl-lwp-simple 6.15 would require │ └─ perl >=5.22.0,<5.23.0 , which conflicts with any installable versions previously reported; ├─ perl-lwp-simple [6.15|6.67] would require │ ├─ perl-libwww-perl 6.67.* , which can be installed (as previously explained); │ └─ perl-net-http with the potential options │ ├─ perl-net-http [6.09|6.18|6.19|6.22], which can be installed (as previously explained); │ └─ perl-net-http 6.09, which cannot be installed (as previously explained); └─ perl-lwp-simple 6.39 would require └─ perl >=5.32.1,<5.33.0a0 *_perl5, which can be installed.
