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Published 20 hours ago • verified publisher icon sanger-pathogens

kraken

Open zzzapperant opened this issue 1 year ago • 1 comments

Hi, when I installed kraken database, I met some problems with kraken, so I decided to install this using kraken2 related command. But when I use roary with ‘-qc -k’ , it didn't work: kraken-report: database ("/data/workdir/zhangj/kraken_db") does not contain necessary file database.kdb . So I want to know how to solve this problem. Is it necessary to install kraken database? Can roary use kraken2?

zzzapperant avatar Mar 27 '23 02:03 zzzapperant

I met with this problem too, if you sloved that?

KJ-Ma avatar Jun 03 '23 03:06 KJ-Ma