Unable to run roary.plots

[EllistonV]

Hello,

I ran roary and got the necessary files. I downloaded the roary.plots code in a "roary_plots.py" file. I tried running the next line of code:

python roary_plots.py core_gene_alignment.nwk gene_presence_absence.csv

I got the following message: Traceback (most recent call last): File "roary_plots.py", line 65, in <module> import matplotlib ModuleNotFoundError: No module named 'matplotlib'

I hope you can help me out. Thank you!

[AndreaZen-1]

You are missing the required python libraries to make the plots.

Install it with pip, like so: pip install matplotlib

You will probably also need seaborn and biopython, that you can install in the same way.