Samuel Lampa

Segmentation fault on classify with refseq_virus, [Edit: unless --max-ram is used]

3

I'm getting segmentation faults when trying to run `metabuli classify` on various input files, towards the refseq_virus database. ## Steps to reproduce: 1. Download [metabuli 1.1.1 with avx2](https://github.com/steineggerlab/Metabuli/releases/download/1.1.1/metabuli-linux-avx2.tar.gz), extract into...

Creating blast database gives error

1

When trying to [create a Blast database in the Blast tutorial](https://sandbox.bio/tutorials/blast-intro/3), I get the following error, both in Brave and Chromium: ```bash Error: mdb_env_open: Invalid argument ``` Full terminal up...

Move operation in Software carpentries "Terminal exercises" crashes browser tab

5

[Slide 4 of the Software carpentries terminal tutorial](https://sandbox.bio/tutorials/carpentries-shell-novice/4) crashes the browser window for me when doing a move operation: Doing a `cp` instead works fine. ## System info - Brave...

## Problem When running a command like `bwa index` on a file like `seq.fa`, it will produce a number of files based on the input file name, like: ``` seq.fa.bwt...

Support compressed (e.g. gzipped) fasta files for cgMLST alleles

1

This is a suggestion to keep the allele files, which are currently uncompressed .fasta, as compressed e.g. with gzip, to lower the storage usage. The background is that we are...